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GrainGenes Marker Report: POPA3_0696

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Locus	POPA3_0696
Type	SNP
Synonym	Other name 12_30696 BOPA2_12_30696 Synonym 12_30696
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 70.8 Hordeum-OPA-2009-2H 78.03 Hordeum-OPA123-2008-2H 78.03 Hordeum-OPAConsensus-2011-2H 89.68
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_3479 i_12_30696
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0696 Marker name in barley OPA1 = 12_30696 Original SNP name = U32_7285_433 Most representative HarvEST:Barley Assembly #32 Unigene = 7285 Most representative HarvEST:Barley Assembly #35 Unigene = 3479 HarvEST Unigene 35 Probe Set = Contig9523_at; HVSMEm0012P04r2_s_at Unigene 35 Rice Locus = LOC_Os04g43220 Description for best rice BLAST hit to Unigene 35 member = zinc finger, C3HC4 type family protein, expressed; E value = 1E-164 Marker name in barley Pilot OPA3 = 3_0696 Marker name in barley OPA2 = 12_30696 HarvEST Unigene 35 Probe Set = Contig9523_at, HVSMEm0012P04r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein zinc finger, C3HC4 type family protein, expressed; E value = 1E-164 BLAST hit in the rice genome = zinc finger, C3HC4 type family protein, expressed
Probe for Locus	HAR35_3479
Locus	POPA3_0696
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare