Query (optional)   in Class  

GrainGenes Marker Report: POPA3_0751

[Submit comment/correction]

Locus
POPA3_0751
Type
SNP
Synonym
Other name12_30751
BOPA2_12_30751
Synonym12_30751
Chromosome
6H
Chromosome Arm
6HS
Map
Hordeum-OPA-2009-6H49.4
Hordeum-OPA123-2008-6H49.4
Hordeum-OPAConsensus-2011-6H52.85
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_4733
i_12_30751
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_0751
Marker name in barley OPA1 = 12_30751
Original SNP name = U32_8416_272
Most representative HarvEST:Barley Assembly #32 Unigene = 8416
Most representative HarvEST:Barley Assembly #35 Unigene = 4733
HarvEST Unigene 35 Probe Set = Contig10750_at
Unigene 35 Rice Locus = LOC_Os02g05510
Description for best rice BLAST hit to Unigene 35 member = GATA transcription factor 25, putative, expressed; E value = 7E-74
Marker name in barley Pilot OPA3 = 3_0751
Marker name in barley OPA2 = 12_30751
Original SNP name = U35_14244_456
Description for best rice BLAST hit to Unigene 35 member = protein GATA transcription factor 25, putative, expressed; E value = 7E-74
BLAST hit in the rice genome = GATA transcription factor 25, putative, expressed


Probe for Locus
HAR35_4733
Locus
POPA3_0751
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare