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GrainGenes Marker Report: POPA3_0777

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Locus	POPA3_0777
Type	SNP
Synonym	Other name 12_30777 BOPA2_12_30777 Synonym 12_30777
Chromosome	4H
Chromosome Arm	4HO
Map	Barley, 2012 9KSNP 4H 51 Hordeum-OPA-2009-4H 49.5 Hordeum-OPA123-2008-4H 49.5 Hordeum-OPAConsensus-2011-4H 53.94 Hordeum-OWB-OPA2008-4H 52.267
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_19552 i_12_30777
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0777 Marker name in barley OPA1 = 12_30777 Original SNP name = U32_9068_460 Most representative HarvEST:Barley Assembly #32 Unigene = 9068 Most representative HarvEST:Barley Assembly #35 Unigene = 19552 HarvEST Unigene 35 Probe Set = Contig11356_at Unigene 35 Rice Locus = LOC_Os02g11030 Description for best rice BLAST hit to Unigene 35 member = structural constituent of ribosome, putative, expressed; E value = 2E-90 Marker name in barley Pilot OPA3 = 3_0777 Marker name in barley OPA2 = 12_30777 Description for best rice BLAST hit to Unigene 35 member = protein structural constituent of ribosome, putative, expressed; E value = 2E-90 BLAST hit in the rice genome = structural constituent of ribosome, putative, expressed
Probe for Locus	HAR35_19552
Locus	POPA3_0777
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare