GrainGenes Marker Report: POPA3_0819
Locus
POPA3_0819
Type
SNP
Synonym
Synonym 12_30819
Map Data
Barley, OPA 2009, Consensus
Probe
HAR35_16772
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0819 Marker name in barley OPA1 = 12_30819 Original SNP name = OSU_Aglu2_703 Most representative HarvEST:Barley Assembly #32 Unigene = 10168 Most representative HarvEST:Barley Assembly #35 Unigene = 16772 HarvEST Unigene 35 Probe Set = Contig12999_at Unigene 35 Rice Locus = LOC_Os01g03950 Description for best rice BLAST hit to Unigene 35 member = alpha-D-xylosidase, putative, expressed; E value = 6E-64 BLAST hit in the rice genome = alpha-D-xylosidase, putative, expressed
Probe for Locus
HAR35_16772
Locus
POPA1_1310 POPA3_0818 POPA3_0819
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA3_0819
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