Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0820

[Submit comment/correction]

Locus	POPA3_0820
Type	SNP
Synonym	Synonym 12_30820
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 59.71 Hordeum-OPA123-2008-1H 59.71 Hordeum-OPAConsensus-2011-1H 4.71
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_5442
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0820 Marker name in barley OPA1 = 12_30820 Original SNP name = OSU_Aglu3_304 Most representative HarvEST:Barley Assembly #32 Unigene = 11606 Most representative HarvEST:Barley Assembly #35 Unigene = 5442 HarvEST Unigene 35 Probe Set = Contig15078_at Unigene 35 Rice Locus = LOC_Os07g23880 Description for best rice BLAST hit to Unigene 35 member = alpha-glucosidase 2, putative, expressed; E value = 6E-65 Marker name in barley Pilot OPA3 = 3_0820 Marker name in barley OPA2 = 12_30820 Description for best rice BLAST hit to Unigene 35 member = protein alpha-glucosidase 2, putative, expressed; E value = 6E-65 BLAST hit in the rice genome = alpha-glucosidase 2, putative, expressed
Probe for Locus	HAR35_5442
Locus	POPA3_0820 POPA3_0821
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare