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GrainGenes Marker Report: POPA3_0830

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Locus	POPA3_0830
Type	SNP
Synonym	Synonym 12_30830
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 153.51 Hordeum-OPA123-2008-5H 153.51 Hordeum-OPAConsensus-2011-5H 149.27 Hordeum-OWB-OPA2008-5H 182.676
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_16166
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0830 Marker name in barley OPA1 = 12_30830 Original SNP name = OSU_Contig294_s_at_57 Most representative HarvEST:Barley Assembly #32 Unigene = 203 Most representative HarvEST:Barley Assembly #35 Unigene = 16166 HarvEST Unigene 35 Probe Set = Contig294_s_at; Contig408_at Unigene 35 Rice Locus = LOC_Os10g41960 Description for best rice BLAST hit to Unigene 35 member = eukaryotic translation initiation factor 3 subunit 9, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0830 Marker name in barley OPA2 = 12_30830 HarvEST Unigene 35 Probe Set = Contig294_s_at, Contig408_at Description for best rice BLAST hit to Unigene 35 member = protein eukaryotic translation initiation factor 3 subunit 9, putative, expressed; E value = 0 BLAST hit in the rice genome = eukaryotic translation initiation factor 3 subunit 9, putative, expressed
Probe for Locus	HAR35_16166
Locus	POPA1_0217 POPA3_0830
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare