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GrainGenes Marker Report: POPA3_0834

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Locus	POPA3_0834
Type	SNP
Synonym	Synonym 12_30834
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 100.28 Hordeum-OPA123-2008-5H 100.28 Hordeum-OPAConsensus-2011-5H 88.05 Hordeum-OWB-OPA2008-5H 113.773
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_2033
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0834 Marker name in barley OPA1 = 12_30834 Original SNP name = OSU_Contig5182_at_132 Most representative HarvEST:Barley Assembly #32 Unigene = 3685 Most representative HarvEST:Barley Assembly #35 Unigene = 2033 HarvEST Unigene 35 Probe Set = Contig5182_at Unigene 35 Rice Locus = LOC_Os09g32220 Description for best rice BLAST hit to Unigene 35 member = protein pob, putative, expressed; E value = 1E-125 Marker name in barley Pilot OPA3 = 3_0834 Marker name in barley OPA2 = 12_30834 Description for best rice BLAST hit to Unigene 35 member = protein protein pob, putative, expressed; E value = 1E-125 BLAST hit in the rice genome = protein pob, putative, expressed
Probe for Locus	HAR35_2033
Locus	POPA1_0518 POPA3_0834
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare