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GrainGenes Marker Report: POPA3_0857

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Locus	POPA3_0857
Type	SNP
Synonym	Other name 12_30857 BOPA2_12_30857 Synonym 12_30857
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 56.2 Hordeum-OPA-2009-6H 56.48 Hordeum-OPA123-2008-6H 56.48 Hordeum-OPAConsensus-2011-6H 61.19
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_5746 i_12_30857
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 14 ] Marker name in barley Pilot OPA1 = 3_0857 Marker name in barley OPA1 = 12_30857 Original SNP name = OSU_HvCry2_1031 Most representative HarvEST:Barley Assembly #32 Unigene = 11450 Most representative HarvEST:Barley Assembly #35 Unigene = 5746 HarvEST Unigene 35 Probe Set = Contig14562_at; HU05H13u_s_at Unigene 35 Rice Locus = LOC_Os02g41550 Description for best rice BLAST hit to Unigene 35 member = cryptochrome 2 apoprotein, putative, expressed; E value = 2E-77 Marker name in barley Pilot OPA3 = 3_0857 Marker name in barley OPA2 = 12_30857 Original SNP name = ABC10338_1_723 HarvEST Unigene 35 Probe Set = Contig14562_at, HU05H13u_s_at Description for best rice BLAST hit to Unigene 35 member = protein cryptochrome 2 apoprotein, putative, expressed; E value = 2E-77 BLAST hit in the rice genome = cryptochrome 2 apoprotein, putative, expressed
Probe for Locus	HAR35_5746
Locus	POPA3_0857 POPA3_0858 POPA3_0859
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare