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GrainGenes Marker Report: POPA3_0864

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Locus	POPA3_0864
Type	SNP
Synonym	Other name 12_30864 BOPA2_12_30864 Synonym 12_30864
Chromosome	4H
Chromosome Arm	4HS
Map	Barley, 2012 9KSNP 4H 34.3 Hordeum-OPA-2009-4H 33.38 Hordeum-OPA123-2008-4H 33.38 Hordeum-OPAConsensus-2011-4H 35.24
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2724 i_12_30864
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0864 Marker name in barley OPA1 = 12_30864 Original SNP name = OSU_HvPhyA_3050 Most representative HarvEST:Barley Assembly #32 Unigene = 6613 Most representative HarvEST:Barley Assembly #35 Unigene = 2724 HarvEST Unigene 35 Probe Set = Contig8987_at; HVSMEk0021N05r2_s_at Unigene 35 Rice Locus = LOC_Os03g51030 Description for best rice BLAST hit to Unigene 35 member = phytochrome A, putative, expressed; E value = 1E-168 Marker name in barley Pilot OPA3 = 3_0864 Marker name in barley OPA2 = 12_30864 HarvEST Unigene 35 Probe Set = Contig8987_at, HVSMEk0021N05r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein phytochrome A, putative, expressed; E value = 1E-168 BLAST hit in the rice genome = phytochrome A, putative, expressed
Probe for Locus	HAR35_2724
Locus	POPA3_0863 POPA3_0864 POPA3_0865
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare