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GrainGenes Marker Report: POPA3_0899

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Locus	POPA3_0899
Type	SNP
Synonym	Synonym 12_30899
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 86.63 Hordeum-OPA123-2008-2H 86.63 Hordeum-OPAConsensus-2011-2H 99.39
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_47126
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0899 Marker name in barley OPA1 = 12_30899 Original SNP name = OSU_VRS1_HvHox1_49 Most representative HarvEST:Barley Assembly #32 Unigene = 0 Most representative HarvEST:Barley Assembly #35 Unigene = 47126 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os07g39320 Description for best rice BLAST hit to Unigene 35 member = DNA binding protein, putative, expressed; E value = 0.00000008 Marker name in barley Pilot OPA3 = 3_0899 Marker name in barley OPA2 = 12_30899 Original SNP name = OSU_VRS1_HvHox1_260 Description for best rice BLAST hit to Unigene 35 member = protein DNA binding protein, putative, expressed; E value = 0.00000008 BLAST hit in the rice genome = DNA binding protein, putative, expressed
Probe for Locus	HAR35_47126
Locus	POPA3_0896 [ Show all 6 ]
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare