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GrainGenes Marker Report: POPA3_0914

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Locus	POPA3_0914
Type	SNP
Synonym	Other name 12_30914 BOPA2_12_30914 Synonym 12_30914
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 139.65 Hordeum-OPA123-2008-2H 139.65 Hordeum-OPAConsensus-2011-2H 156.77
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15644 i_12_30914
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0914 Marker name in barley OPA1 = 12_30914 Original SNP name = SCRI_abc07356_01_1 Most representative HarvEST:Barley Assembly #32 Unigene = 5416 Most representative HarvEST:Barley Assembly #35 Unigene = 15644 HarvEST Unigene 35 Probe Set = Contig7356_at Unigene 35 Rice Locus = LOC_Os11g32650 Description for best rice BLAST hit to Unigene 35 member = chalcone synthase, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0914 Marker name in barley OPA2 = 12_30914 Original SNP name = U35_1801_2794 Description for best rice BLAST hit to Unigene 35 member = protein chalcone synthase, putative, expressed; E value = 0 BLAST hit in the rice genome = chalcone synthase, putative, expressed
Probe for Locus	HAR35_15644
Locus	POPA3_0914 POPA1_1167
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare