Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0915

[Submit comment/correction]

Locus	POPA3_0915
Type	SNP
Synonym	Other name 12_30915 BOPA2_12_30915 Synonym 12_30915
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 13.23 Hordeum-OPA123-2008-3H 13.23 Hordeum-OPAConsensus-2011-3H 14.91 Hordeum-OWB-OPA2008-3H 15.388
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_17334 i_12_30915
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0915 Marker name in barley OPA1 = 12_30915 Original SNP name = SCRI_abc07947_01_1 Most representative HarvEST:Barley Assembly #32 Unigene = 5923 Most representative HarvEST:Barley Assembly #35 Unigene = 17334 HarvEST Unigene 35 Probe Set = Contig7947_at Unigene 35 Rice Locus = LOC_Os01g03510 Description for best rice BLAST hit to Unigene 35 member = stress protein, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0915 Marker name in barley OPA2 = 12_30915 Description for best rice BLAST hit to Unigene 35 member = protein stress protein, putative, expressed; E value = 0 BLAST hit in the rice genome = stress protein, putative, expressed
Probe for Locus	HAR35_17334
Locus	POPA3_0915
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare