GrainGenes Marker Report: POPA3_0917
Locus
POPA3_0917
Type
SNP
Synonym
Synonym 12_30917
Map Data
Barley, OPA 2009, Consensus
Probe
HAR35_16734
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0917 Marker name in barley OPA1 = 12_30917 Original SNP name = SCRI_abc08244_01_2 Most representative HarvEST:Barley Assembly #32 Unigene = 6195 Most representative HarvEST:Barley Assembly #35 Unigene = 16734 HarvEST Unigene 35 Probe Set = Contig8244_s_at Unigene 35 Rice Locus = LOC_Os05g01240 Description for best rice BLAST hit to Unigene 35 member = AML6, putative, expressed; E value = 1E-105 BLAST hit in the rice genome = AML6, putative, expressed
Probe for Locus
HAR35_16734
Locus
POPA2_1067 POPA3_0916 POPA3_0917
Synonym
Synonym BCD1434 BCD1482
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA3_0917
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