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GrainGenes Marker Report: POPA3_0920

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Locus
POPA3_0920
Type
SNP
Synonym
Other name12_30920
BOPA2_12_30920
Synonym12_30920
Chromosome
3H
Chromosome Arm
3HS
Map
Barley, 2012 9KSNP 3H20.8
Hordeum-OPA-2009-3H24.99
Hordeum-OPA123-2008-3H24.99
Hordeum-OPAConsensus-2011-3H26.71
Hordeum-OWB-OPA2008-3H29.641
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_6646
i_12_30920
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 3_0920
Marker name in barley OPA1 = 12_30920
Original SNP name = SCRI_abc16651_02_484
Most representative HarvEST:Barley Assembly #32 Unigene = 13339
Most representative HarvEST:Barley Assembly #35 Unigene = 6646
HarvEST Unigene 35 Probe Set = Contig16651_at
Unigene 35 Rice Locus = LOC_Os01g04920
Marker name in barley Pilot OPA3 = 3_0920
Marker name in barley OPA2 = 12_30920
Description for best rice BLAST hit to Unigene 35 member = protein glycosyl transferase, group 1 family protein, putative, expressed; E value = 0
BLAST hit in the rice genome = glycosyl transferase, group 1 family protein, putative, expressed


Probe for Locus
HAR35_6646
Locus
POPA3_0920
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare