Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0925

[Submit comment/correction]

Locus	POPA3_0925
Type	SNP
Synonym	Synonym 12_30925
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 37.17 Hordeum-OPA123-2008-3H 37.17 Hordeum-OPAConsensus-2011-3H 37.62
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_22926
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0925 Marker name in barley OPA1 = 12_30925 Original SNP name = SCRI_abc21967_01_1 Most representative HarvEST:Barley Assembly #32 Unigene = 19056 Most representative HarvEST:Barley Assembly #35 Unigene = 22926 HarvEST Unigene 35 Probe Set = HVSMEg0015I17f_at Unigene 35 Rice Locus = LOC_Os01g01312 Description for best rice BLAST hit to Unigene 35 member = retrotransposon protein, putative, Ty1-copia subclass, expressed; E value = 8E-91 Marker name in barley Pilot OPA3 = 3_0925 Marker name in barley OPA2 = 12_30925 Description for best rice BLAST hit to Unigene 35 member = protein retrotransposon protein, putative, Ty1-copia subclass, expressed; E value = 8E-91 BLAST hit in the rice genome = retrotransposon protein, putative, Ty1-copia subclass, expressed
Probe for Locus	HAR35_22926
Locus	POPA3_0925
Synonym	Synonym CDO1435
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare