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GrainGenes Marker Report: POPA3_0927

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Locus	POPA3_0927
Type	SNP
Synonym	Other name 12_30927 BOPA2_12_30927 Synonym 12_30927
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 103.1 Barley, SFNB QTL 2017 3H 117.1 Hordeum-OPA-2009-3H 117.1 Hordeum-OPA123-2008-3H 117.1 Hordeum-OPAConsensus-2011-3H 127.26
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QTL with Locus Marker	QSfnb-3H-117.1
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, SFNB QTL 2017
Species	Hordeum vulgare
Probe	HAR35_14099 i_12_30927
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0927 Marker name in barley OPA1 = 12_30927 Original SNP name = SCRI_aj420778_01_1 Most representative HarvEST:Barley Assembly #32 Unigene = 240 Most representative HarvEST:Barley Assembly #35 Unigene = 14099 HarvEST Unigene 35 Probe Set = Contig417_s_at; Contig940_s_at; HA18O08r_at; HD11C22r_s_at Unigene 35 Rice Locus = LOC_Os05g33380 Description for best rice BLAST hit to Unigene 35 member = fructose-bisphosphate aldolase cytoplasmic isozyme, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0927 Marker name in barley OPA2 = 12_30927 HarvEST Unigene 35 Probe Set = Contig417_s_at, Contig940_s_at, HA18O08r_at, HD11C22r_s_at Description for best rice BLAST hit to Unigene 35 member = protein fructose-bisphosphate aldolase cytoplasmic isozyme, putative, expressed; E value = 0 BLAST hit in the rice genome = fructose-bisphosphate aldolase cytoplasmic isozyme, putative, expressed
Probe for Locus	HAR35_14099
Locus	POPA3_0927 POPA3_0928
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare