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GrainGenes Marker Report: POPA3_0928

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Locus
POPA3_0928
Type
SNP
Chromosome
3H
Chromosome Arm
3HL
Map
Barley-Core-2014_3H107.2
Hordeum-OPA-2009-3H117.87
Hordeum-OPA123-2008-3H117.87
Hordeum-OPAConsensus-2011-3H128.01
Hordeum-OWB-OPA2008-3H134.924
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, USDA Core, 2014 Consensus
Probe
HAR35_14099
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 3_0928
Most representative HarvEST:Barley Assembly #32 Unigene = 240
Most representative HarvEST:Barley Assembly #35 Unigene = 14099
HarvEST Unigene 35 Probe Set = Contig417_s_at; Contig940_s_at; HA18O08r_at; HD11C22r_s_at
Unigene 35 Rice Locus = LOC_Os05g33380
Description for best rice BLAST hit to Unigene 35 member = fructose-bisphosphate aldolase cytoplasmic isozyme, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0928
HarvEST Unigene 35 Probe Set = Contig417_s_at, Contig940_s_at, HA18O08r_at, HD11C22r_s_at
Description for best rice BLAST hit to Unigene 35 member = protein fructose-bisphosphate aldolase cytoplasmic isozyme, putative, expressed; E value = 0
BLAST hit in the rice genome = fructose-bisphosphate aldolase cytoplasmic isozyme, putative, expressed


Probe for Locus
HAR35_14099
Locus
POPA3_0927
POPA3_0928
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare