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GrainGenes Marker Report: POPA3_0931

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Locus	POPA3_0931
Type	SNP
Synonym	Synonym 12_30931
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 93.12 Hordeum-OPA123-2008-6H 93.12 Hordeum-OPAConsensus-2011-6H 104.5
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_473
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0931 Marker name in barley OPA1 = 12_30931 Original SNP name = SCRI_bbc00578_01_2 Most representative HarvEST:Barley Assembly #32 Unigene = 578 Most representative HarvEST:Barley Assembly #35 Unigene = 473 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os11g47760 Description for best rice BLAST hit to Unigene 35 member = heat shock cognate 70 kDa protein 2, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0931 Marker name in barley OPA2 = 12_30931 Description for best rice BLAST hit to Unigene 35 member = protein heat shock cognate 70 kDa protein 2, putative, expressed; E value = 0 BLAST hit in the rice genome = heat shock cognate 70 kDa protein 2, putative, expressed
Probe for Locus	HAR35_473
Locus	POPA2_0996 POPA3_0931 POPA1_0801 POPA3_0932
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare