Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0940

[Submit comment/correction]

Locus	POPA3_0940
Type	SNP
Synonym	Other name 12_30940 BOPA2_12_30940 Synonym 12_30940
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 72.54 Hordeum-OPA123-2008-6H 72.54 Hordeum-OPAConsensus-2011-6H 88.88
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_675 i_12_30940
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0940 Marker name in barley OPA1 = 12_30940 Original SNP name = SCRI_bbc01653_03_303 Most representative HarvEST:Barley Assembly #32 Unigene = 1653 Most representative HarvEST:Barley Assembly #35 Unigene = 675 HarvEST Unigene 35 Probe Set = Contig2442_at; EBpi01_SQ004_I24_s_at Unigene 35 Rice Locus = LOC_Os09g27830 Marker name in barley Pilot OPA3 = 3_0940 Marker name in barley OPA2 = 12_30940 HarvEST Unigene 35 Probe Set = Contig2442_at, EBpi01_SQ004_I24_s_at Description for best rice BLAST hit to Unigene 35 member = protein OsPDIL2-3 - Oryza sativa protein disulfide isomerase, expressed; E value = 0 BLAST hit in the rice genome = OsPDIL2-3 - Oryza sativa protein disulfide isomerase, expressed
Probe for Locus	HAR35_675
Locus	POPA1_0140 POPA3_0939 POPA3_0940
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare