GrainGenes Marker Report: POPA3_0949
Locus
POPA3_0949
Type
SNP
Synonym
Synonym 12_30949
Map Data
Barley, OPA 2009, Consensus
Probe
HAR35_16421
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0949 Marker name in barley OPA1 = 12_30949 Original SNP name = SCRI_bbc04478_01_1 Most representative HarvEST:Barley Assembly #32 Unigene = 4478 Most representative HarvEST:Barley Assembly #35 Unigene = 16421 HarvEST Unigene 35 Probe Set = Contig6180_s_at Unigene 35 Rice Locus = LOC_Os08g33630 Description for best rice BLAST hit to Unigene 35 member = transmembrane protein PFT27, putative, expressed; E value = 1E-114 BLAST hit in the rice genome = transmembrane protein PFT27, putative, expressed
Probe for Locus
HAR35_16421
Locus
POPA3_0949 POPA3_0549
Synonym
Synonym CDO1451
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA3_0949
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