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GrainGenes Marker Report: POPA3_0955

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Locus	POPA3_0955
Type	SNP
Synonym	Other name 12_30955 BOPA2_12_30955 Synonym 12_30955
Chromosome	1H
Chromosome Arm	1HS
Map	Hordeum-OPA-2009-1H 15.3 Hordeum-OPA123-2008-1H 15.3 Hordeum-OPAConsensus-2011-1H 14.59 Hordeum-OWB-OPA2008-1H 25.523
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_2554 i_12_30955
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0955 Marker name in barley OPA1 = 12_30955 Original SNP name = SCRI_bbc07107_01_431 Most representative HarvEST:Barley Assembly #32 Unigene = 7107 Most representative HarvEST:Barley Assembly #35 Unigene = 2554 HarvEST Unigene 35 Probe Set = Contig9276_at; Contig9277_s_at; HVSMEb0013I22f_s_at Unigene 35 Rice Locus = LOC_Os05g02130 Description for best rice BLAST hit to Unigene 35 member = ankyrin repeat domain-containing protein 28, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0955 Marker name in barley OPA2 = 12_30955 HarvEST Unigene 35 Probe Set = Contig9276_at, Contig9277_s_at, HVSMEb0013I22f_s_at Description for best rice BLAST hit to Unigene 35 member = protein ankyrin repeat domain-containing protein 28, putative, expressed; E value = 0 BLAST hit in the rice genome = ankyrin repeat domain-containing protein 28, putative, expressed
Probe for Locus	HAR35_2554
Locus	POPA3_0118 POPA3_0955 POPA3_0954
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare