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GrainGenes Marker Report: POPA3_0963

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Locus	POPA3_0963
Type	SNP
Synonym	Other name 12_30963 BOPA2_12_30963 Synonym 12_30963
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 130.82 Hordeum-OPA123-2008-3H 130.82 Hordeum-OPAConsensus-2011-3H 137.74
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_20899 i_12_30963
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0963 Marker name in barley OPA1 = 12_30963 Original SNP name = SCRI_bbc11945_01_349 Most representative HarvEST:Barley Assembly #32 Unigene = 11945 Most representative HarvEST:Barley Assembly #35 Unigene = 20899 HarvEST Unigene 35 Probe Set = Contig14829_at Unigene 35 Rice Locus = LOC_Os01g68440 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-107 Marker name in barley Pilot OPA3 = 3_0963 Marker name in barley OPA2 = 12_30963 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-107 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_20899
Locus	POPA3_0963 POPA3_0964
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare