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GrainGenes Marker Report: POPA3_0974

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Locus	POPA3_0974
Type	SNP
Synonym	Other name 12_30974 BOPA2_12_30974 Synonym 12_30974
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 137.3 Barley, SFNB QTL 2017 7H 161.43 Hordeum-OPA-2009-7H 161.43 Hordeum-OPA123-2008-7H 161.43 Hordeum-OPAConsensus-2011-7H 157.44
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, SFNB QTL 2017
Species	Hordeum vulgare
Probe	HAR35_42528 i_12_30974
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0974 Marker name in barley OPA1 = 12_30974 Original SNP name = SCRI_bbc32814_01_394 Most representative HarvEST:Barley Assembly #32 Unigene = 32814 Most representative HarvEST:Barley Assembly #35 Unigene = 42528 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os06g51520 Description for best rice BLAST hit to Unigene 35 member = lysine ketoglutarate reductase trans-splicing related 1, putative, expressed; E value = 2E-24 Marker name in barley Pilot OPA3 = 3_0974 Marker name in barley OPA2 = 12_30974 Description for best rice BLAST hit to Unigene 35 member = protein lysine ketoglutarate reductase trans-splicing related 1, putative, expressed; E value = 2E-24 BLAST hit in the rice genome = lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
Probe for Locus	HAR35_42528
Locus	POPA3_0974
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare