Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0978

[Submit comment/correction]

Locus	POPA3_0978
Type	SNP
Synonym	Other name 12_30978 BOPA2_12_30978 Synonym 12_30978
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 2.09 Hordeum-OPA123-2008-5H 2.09
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_73 i_12_30978
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 3_0978 Marker name in barley OPA1 = 12_30978 Original SNP name = SCRI_hina_0180 Most representative HarvEST:Barley Assembly #32 Unigene = 166 Most representative HarvEST:Barley Assembly #35 Unigene = 73 HarvEST Unigene 35 Probe Set = Contig224_s_at Unigene 35 Rice Locus = Description for best rice BLAST hit to Unigene 35 member = ; E value = Marker name in barley Pilot OPA3 = 3_0978 Marker name in barley OPA2 = 12_30978
Probe for Locus	HAR35_73
Locus	POPA2_0226 POPA3_0978 POPA3_0979 POPA3_0980
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare