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GrainGenes Marker Report: POPA3_1000

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Locus	POPA3_1000
Type	SNP
Synonym	Other name 12_31000 BOPA2_12_31000 Synonym 12_31000
Chromosome	7H
Chromosome Arm	7HO
Map	Hordeum-OPA-2009-7H 78.22 Hordeum-OPA123-2008-7H 78.22 Hordeum-OPAConsensus-2011-7H 81.78
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_36610 i_12_31000
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1000 Marker name in barley OPA1 = 12_31000 Original SNP name = SCRI_olad_139_01 Most representative HarvEST:Barley Assembly #32 Unigene = 27997 Most representative HarvEST:Barley Assembly #35 Unigene = 36610 HarvEST Unigene 35 Probe Set = HA08o22r_at Unigene 35 Rice Locus = LOC_Os04g57060 Description for best rice BLAST hit to Unigene 35 member = retrotransposon protein, putative, unclassified; E value = 1E-26 Marker name in barley Pilot OPA3 = 3_1000 Marker name in barley OPA2 = 12_31000 Description for best rice BLAST hit to Unigene 35 member = protein retrotransposon protein, putative, unclassified; E value = 1E-26 BLAST hit in the rice genome = retrotransposon protein, putative, unclassified
Probe for Locus	HAR35_36610
Locus	POPA3_1000
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare