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GrainGenes Marker Report: POPA3_1004

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Locus
POPA3_1004
Type
SNP
Synonym
Synonym12_31004
Chromosome
6H
Chromosome Arm
6HS
Map
Hordeum-OPA-2009-6H54.6
Hordeum-OPA123-2008-6H54.6
Hordeum-OPAConsensus-2011-6H58.48
Hordeum-OWB-OPA2008-6H66.332
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_17325
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 14 ]
Marker name in barley Pilot OPA1 = 3_1004
Marker name in barley OPA1 = 12_31004
Original SNP name = SCRI_olad_150_02
Most representative HarvEST:Barley Assembly #32 Unigene = 8137
Most representative HarvEST:Barley Assembly #35 Unigene = 17325
HarvEST Unigene 35 Probe Set = Contig10449_at; Contig13425_at
Unigene 35 Rice Locus = LOC_Os02g09420
Description for best rice BLAST hit to Unigene 35 member = cyclase, putative, expressed; E value = 1E-117
Marker name in barley Pilot OPA3 = 3_1004
Marker name in barley OPA2 = 12_31004
Original SNP name = ABC03232_1_76
HarvEST Unigene 35 Probe Set = Contig10449_at, Contig13425_at
Description for best rice BLAST hit to Unigene 35 member = protein cyclase, putative, expressed; E value = 1E-117
BLAST hit in the rice genome = cyclase, putative, expressed


Probe for Locus
HAR35_17325
Locus
POPA3_1004
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare