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GrainGenes Marker Report: POPA3_1008

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Locus	POPA3_1008
Type	SNP
Synonym	Other name 12_31008 BOPA2_12_31008 Synonym 12_31008
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 54.4 Hordeum-OPA123-2008-3H 54.4 Hordeum-OPAConsensus-2011-3H 65.25 Hordeum-OWB-OPA2008-3H 60.753
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_13979 i_12_31008
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1008 Marker name in barley OPA1 = 12_31008 Original SNP name = SCRI_olad_172 Most representative HarvEST:Barley Assembly #32 Unigene = 739 Most representative HarvEST:Barley Assembly #35 Unigene = 13979 HarvEST Unigene 35 Probe Set = Contig1132_s_at Unigene 35 Rice Locus = LOC_Os01g05970 Description for best rice BLAST hit to Unigene 35 member = core histone H2A/H2B/H3/H4 family protein, expressed; E value = 6E-61 Marker name in barley Pilot OPA3 = 3_1008 Marker name in barley OPA2 = 12_31008 Original SNP name = ABC05558_1_907 Description for best rice BLAST hit to Unigene 35 member = protein core histone H2A/H2B/H3/H4 family protein, expressed; E value = 6E-61 BLAST hit in the rice genome = core histone H2A/H2B/H3/H4 family protein, expressed
Probe for Locus	HAR35_13979
Locus	POPA3_1008
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare