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GrainGenes Marker Report: POPA3_1011

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Locus	POPA3_1011
Type	SNP
Synonym	Other name 12_31011 BOPA2_12_31011 Synonym 12_31011
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, SFNB QTL 2017 3H 58.64 Hordeum-OPA-2009-3H 58.64 Hordeum-OPA123-2008-3H 58.64 Hordeum-OPAConsensus-2011-3H 71.26
	[ Show Nearby Loci ]
QTL with Locus Marker	QSfnb-3H-58.64
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, SFNB QTL 2017
Species	Hordeum vulgare
Probe	HAR35_21320 i_12_31011
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 3_1011 Marker name in barley OPA1 = 12_31011 Original SNP name = SCRI_olad_179_02 Most representative HarvEST:Barley Assembly #32 Unigene = 13130 Most representative HarvEST:Barley Assembly #35 Unigene = 21320 HarvEST Unigene 35 Probe Set = Contig15645_at Unigene 35 Rice Locus = Description for best rice BLAST hit to Unigene 35 member = ; E value = Marker name in barley Pilot OPA3 = 3_1011 Marker name in barley OPA2 = 12_31011
Probe for Locus	HAR35_21320
Locus	POPA3_1011
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare