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GrainGenes Marker Report: POPA3_1018

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Locus	POPA3_1018
Type	SNP
Synonym	Other name 12_31018 BOPA2_12_31018 Synonym 12_31018
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 75.7 Hordeum-OPA-2009-3H 89.31 Hordeum-OPA123-2008-3H 89.31 Hordeum-OPAConsensus-2011-3H 100.29
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15709 i_12_31018
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 14 ] Marker name in barley Pilot OPA1 = 3_1018 Marker name in barley OPA1 = 12_31018 Original SNP name = SCRI_olad_217 Most representative HarvEST:Barley Assembly #32 Unigene = 2534 Most representative HarvEST:Barley Assembly #35 Unigene = 15709 HarvEST Unigene 35 Probe Set = Contig3667_s_at; EBem10_SQ002_I10_s_at; HS18K19u_s_at; X87690_s_at Unigene 35 Rice Locus = LOC_Os01g59660 Description for best rice BLAST hit to Unigene 35 member = transcription factor GAMYB, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_1018 Marker name in barley OPA2 = 12_31018 Original SNP name = U32_6715_250 HarvEST Unigene 35 Probe Set = Contig3667_s_at, EBem10_SQ002_I10_s_at, HS18K19u_s_at, X87690_s_at Description for best rice BLAST hit to Unigene 35 member = protein transcription factor GAMYB, putative, expressed; E value = 0 BLAST hit in the rice genome = transcription factor GAMYB, putative, expressed
Probe for Locus	HAR35_15709
Locus	POPA3_1018
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare