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GrainGenes Marker Report: POPA3_1041

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Locus	POPA3_1041
Type	SNP
Synonym	Other name 12_31041 BOPA2_12_31041 Synonym 12_31041
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_29259 i_12_31041
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_1041 Marker name in barley OPA1 = 12_31041 Original SNP name = UCI_Dhn1_676 Most representative HarvEST:Barley Assembly #32 Unigene = 25379 Most representative HarvEST:Barley Assembly #35 Unigene = 29259 HarvEST Unigene 35 Probe Set = Contig1725_s_at Unigene 35 Rice Locus = LOC_Os11g26790 Description for best rice BLAST hit to Unigene 35 member = water stress-inducible protein Rab21, putative, expressed; E value = 2E-40 BLAST hit in the rice genome = water stress-inducible protein Rab21, putative, expressed
Probe for Locus	HAR35_29259
Locus	POPA3_1041 POPA3_1038 POPA3_1039 POPA3_1040