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GrainGenes Marker Report: POPA3_1042

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Locus	POPA3_1042
Type	SNP
Synonym	Other name 12_31042 BOPA2_12_31042 Synonym 12_31042
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 97.39 Hordeum-OPA123-2008-6H 97.39 Hordeum-OPAConsensus-2011-6H 112.39 Hordeum-OWB-OPA2008-6H 119.497
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14539 i_12_31042
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1042 Marker name in barley OPA1 = 12_31042 Original SNP name = UCI_Dhn5_1042 Most representative HarvEST:Barley Assembly #32 Unigene = 1158 Most representative HarvEST:Barley Assembly #35 Unigene = 14539 HarvEST Unigene 35 Probe Set = Contig1717_s_at Unigene 35 Rice Locus = LOC_Os11g26790 Description for best rice BLAST hit to Unigene 35 member = water stress-inducible protein Rab21, putative, expressed; E value = 2E-22 Marker name in barley Pilot OPA3 = 3_1042 Marker name in barley OPA2 = 12_31042 Description for best rice BLAST hit to Unigene 35 member = protein water stress-inducible protein Rab21, putative, expressed; E value = 2E-22 BLAST hit in the rice genome = water stress-inducible protein Rab21, putative, expressed
Probe for Locus	HAR35_14539
Locus	POPA3_1042 POPA3_1043
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare