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GrainGenes Marker Report: POPA3_1053

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Locus	POPA3_1053
Type	SNP
Synonym	Other name 12_31053 BOPA2_12_31053 Synonym 12_31053
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_14629 i_12_31053
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_1053 Marker name in barley OPA1 = 12_31053 Original SNP name = UCI_Faldh_686 Most representative HarvEST:Barley Assembly #32 Unigene = 1192 Most representative HarvEST:Barley Assembly #35 Unigene = 14629 HarvEST Unigene 35 Probe Set = Contig4341_s_at Unigene 35 Rice Locus = LOC_Os02g57040 Description for best rice BLAST hit to Unigene 35 member = alcohol dehydrogenase class 3, putative, expressed; E value = 0 BLAST hit in the rice genome = alcohol dehydrogenase class 3, putative, expressed
Probe for Locus	HAR35_14629
Locus	POPA1_0051 POPA3_1053 POPA3_1051 POPA3_1052
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare