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GrainGenes Marker Report: POPA3_1081

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Locus	POPA3_1081
Type	SNP
Synonym	Other name 12_31081 BOPA2_12_31081 Synonym 12_31081
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 140.53 Hordeum-OPA123-2008-1H 140.53 Hordeum-OPAConsensus-2011-1H 143.2 Hordeum-OWB-OPA2008-1H 156.299
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1042 i_12_31081
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1081 Marker name in barley OPA1 = 12_31081 Original SNP name = U35_1042_538 Most representative HarvEST:Barley Assembly #32 Unigene = 2217 Most representative HarvEST:Barley Assembly #35 Unigene = 1042 HarvEST Unigene 35 Probe Set = Contig3229_s_at; Contig3231_at Unigene 35 Rice Locus = LOC_Os05g51700 Description for best rice BLAST hit to Unigene 35 member = nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed; E value = 1E-105 Marker name in barley Pilot OPA3 = 3_1081 Marker name in barley OPA2 = 12_31081 HarvEST Unigene 35 Probe Set = Contig3229_s_at, Contig3231_at Description for best rice BLAST hit to Unigene 35 member = protein nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed; E value = 1E-105 BLAST hit in the rice genome = nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_1042
Locus	POPA3_1081
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare