Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_1095

[Submit comment/correction]

Locus	POPA3_1095
Type	SNP
Synonym	Other name 12_31095 BOPA2_12_31095 Synonym 12_31095
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 109.4 Hordeum-OPA-2009-2H 116.49 Hordeum-OPA123-2008-2H 116.49 Hordeum-OPAConsensus-2011-2H 133.04
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14464 i_12_31095
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1095 Marker name in barley OPA1 = 12_31095 Original SNP name = U35_14464_179 Most representative HarvEST:Barley Assembly #32 Unigene = 1067 Most representative HarvEST:Barley Assembly #35 Unigene = 14464 HarvEST Unigene 35 Probe Set = Contig1611_s_at Unigene 35 Rice Locus = LOC_Os11g29420 Description for best rice BLAST hit to Unigene 35 member = lipid binding protein, putative; E value = 0.00000000002 Marker name in barley Pilot OPA3 = 3_1095 Marker name in barley OPA2 = 12_31095 Original SNP name = U32_2818_392 Description for best rice BLAST hit to Unigene 35 member = protein lipid binding protein, putative; E value = 0.00000000002 BLAST hit in the rice genome = lipid binding protein, putative
Probe for Locus	HAR35_14464
Locus	POPA3_1095
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare