Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_1138

[Submit comment/correction]

Locus	POPA3_1138
Type	SNP
Synonym	Other name 12_31138 BOPA2_12_31138 Synonym 12_31138
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 111.07 Hordeum-OPA123-2008-4H 111.07 Hordeum-OPAConsensus-2011-4H 118.95
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16370 i_12_31138
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1138 Marker name in barley OPA1 = 12_31138 Original SNP name = U35_16370_944 Most representative HarvEST:Barley Assembly #32 Unigene = 4832 Most representative HarvEST:Barley Assembly #35 Unigene = 16370 HarvEST Unigene 35 Probe Set = Contig7377_at; Contig7377_s_at Unigene 35 Rice Locus = LOC_Os05g14240 Description for best rice BLAST hit to Unigene 35 member = aquaporin TIP4.1, putative, expressed; E value = 1E-115 Marker name in barley Pilot OPA3 = 3_1138 Marker name in barley OPA2 = 12_31138 HarvEST Unigene 35 Probe Set = Contig7377_at, Contig7377_s_at Description for best rice BLAST hit to Unigene 35 member = protein aquaporin TIP4.1, putative, expressed; E value = 1E-115 BLAST hit in the rice genome = aquaporin TIP4.1, putative, expressed
Probe for Locus	HAR35_16370
Locus	POPA3_1138
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare