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GrainGenes Marker Report: POPA3_1160

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Locus	POPA3_1160
Type	SNP
Synonym	Other name 12_31160 BOPA2_12_31160 Synonym 12_31160
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 82.5 Hordeum-OPA-2009-1H 88.23 Hordeum-OPA123-2008-1H 88.23 Hordeum-OPAConsensus-2011-1H 74.81
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17015 i_12_31160
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1160 Marker name in barley OPA1 = 12_31160 Original SNP name = U35_17015_1178 Most representative HarvEST:Barley Assembly #32 Unigene = 5637 Most representative HarvEST:Barley Assembly #35 Unigene = 17015 HarvEST Unigene 35 Probe Set = Contig7574_at Unigene 35 Rice Locus = LOC_Os05g38180 Description for best rice BLAST hit to Unigene 35 member = yip1 domain family, member 2, putative, expressed; E value = 1E-134 Marker name in barley Pilot OPA3 = 3_1160 Marker name in barley OPA2 = 12_31160 Description for best rice BLAST hit to Unigene 35 member = protein yip1 domain family, member 2, putative, expressed; E value = 1E-134 BLAST hit in the rice genome = yip1 domain family, member 2, putative, expressed
Probe for Locus	HAR35_17015
Locus	POPA3_1160
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare