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GrainGenes Marker Report: POPA3_1178

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Locus	POPA3_1178
Type	SNP
Synonym	Other name 12_31178 BOPA2_12_31178 Synonym 12_31178
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 55.7 Hordeum-OPA-2009-6H 55.94 Hordeum-OPA123-2008-6H 55.94 Hordeum-OPAConsensus-2011-6H 60.65
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17277 i_12_31178
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1178 Marker name in barley OPA1 = 12_31178 Original SNP name = U35_17277_1661 Most representative HarvEST:Barley Assembly #32 Unigene = 5643 Most representative HarvEST:Barley Assembly #35 Unigene = 17277 HarvEST Unigene 35 Probe Set = Contig7632_at Unigene 35 Rice Locus = LOC_Os02g40784 Description for best rice BLAST hit to Unigene 35 member = CER1, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_1178 Marker name in barley OPA2 = 12_31178 Description for best rice BLAST hit to Unigene 35 member = protein CER1, putative, expressed; E value = 0 BLAST hit in the rice genome = CER1, putative, expressed
Probe for Locus	HAR35_17277
Locus	POPA3_1178
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare