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GrainGenes Marker Report: POPA3_1181

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Locus	POPA3_1181
Type	SNP
Synonym	Other name 12_31181 BOPA2_12_31181 Synonym 12_31181
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_17320 i_12_31181
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_1181 Marker name in barley OPA1 = 12_31181 Original SNP name = U35_17320_651 Most representative HarvEST:Barley Assembly #32 Unigene = 7248 Most representative HarvEST:Barley Assembly #35 Unigene = 17320 HarvEST Unigene 35 Probe Set = Contig9598_at Unigene 35 Rice Locus = LOC_Os01g51120 Description for best rice BLAST hit to Unigene 35 member = vesicle transport v-SNARE 13, putative, expressed; E value = 1E-102 BLAST hit in the rice genome = vesicle transport v-SNARE 13, putative, expressed
Probe for Locus	HAR35_17320
Locus	POPA3_1181
Synonym	Synonym BCD1145
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare