Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_1183

[Submit comment/correction]

Locus	POPA3_1183
Type	SNP
Synonym	Other name 12_31183 BOPA2_12_31183 Synonym 12_31183
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 47.5 Hordeum-OPA-2009-5H 59.4 Hordeum-OPA123-2008-5H 59.4 Hordeum-OPAConsensus-2011-5H 50.53 Hordeum-OWB-OPA2008-5H 66.008
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_17419 i_12_31183
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1183 Marker name in barley OPA1 = 12_31183 Original SNP name = U35_17419_413 Most representative HarvEST:Barley Assembly #32 Unigene = 5953 Most representative HarvEST:Barley Assembly #35 Unigene = 17419 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os09g03620 Description for best rice BLAST hit to Unigene 35 member = nodulation receptor kinase precursor, putative, expressed; E value = 1E-169 Marker name in barley Pilot OPA3 = 3_1183 Marker name in barley OPA2 = 12_31183 Description for best rice BLAST hit to Unigene 35 member = protein nodulation receptor kinase precursor, putative, expressed; E value = 1E-169 BLAST hit in the rice genome = nodulation receptor kinase precursor, putative, expressed
Probe for Locus	HAR35_17419
Locus	POPA3_1183
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare