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GrainGenes Marker Report: POPA3_1215

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Locus
POPA3_1215
Type
SNP
Synonym
Synonym12_31215
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H79.6
Hordeum-OPA123-2008-7H79.6
Hordeum-OPAConsensus-2011-7H81.78
Hordeum-OWB-OPA2008-7H80.664
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_1815
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 14 ]
Marker name in barley Pilot OPA1 = 3_1215
Marker name in barley OPA1 = 12_31215
Original SNP name = U35_1815_1228
Most representative HarvEST:Barley Assembly #32 Unigene = 3778
Most representative HarvEST:Barley Assembly #35 Unigene = 1815
HarvEST Unigene 35 Probe Set = Contig5406_x_at; HT07I09u_s_at; HW03D07u_s_at
Unigene 35 Rice Locus = LOC_Os08g18110
Description for best rice BLAST hit to Unigene 35 member = alpha-soluble NSF attachment protein, putative, expressed; E value = 1E-146
Marker name in barley Pilot OPA3 = 3_1215
Marker name in barley OPA2 = 12_31215
Original SNP name = U32_4768_190
HarvEST Unigene 35 Probe Set = Contig5406_x_at, HT07I09u_s_at, HW03D07u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein alpha-soluble NSF attachment protein, putative, expressed; E value = 1E-146
BLAST hit in the rice genome = alpha-soluble NSF attachment protein, putative, expressed


Probe for Locus
HAR35_1815
Locus
POPA3_1215
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare