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GrainGenes Marker Report: POPA3_1224

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Locus	POPA3_1224
Type	SNP
Synonym	Synonym 12_31224
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 4.08 Hordeum-OPA123-2008-2H 4.08 Hordeum-OPAConsensus-2011-2H 4.59
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_18360
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1224 Marker name in barley OPA1 = 12_31224 Original SNP name = U35_18360_1798 Most representative HarvEST:Barley Assembly #32 Unigene = 8635 Most representative HarvEST:Barley Assembly #35 Unigene = 18360 HarvEST Unigene 35 Probe Set = Contig11003_at; Contig11003_s_at; Contig11004_at Unigene 35 Rice Locus = LOC_Os04g05050 Description for best rice BLAST hit to Unigene 35 member = pectate lyase 8 precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_1224 Marker name in barley OPA2 = 12_31224 HarvEST Unigene 35 Probe Set = Contig11003_at, Contig11003_s_at, Contig11004_at Description for best rice BLAST hit to Unigene 35 member = protein pectate lyase 8 precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = pectate lyase 8 precursor, putative, expressed
Probe for Locus	HAR35_18360
Locus	POPA3_1224
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare