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GrainGenes Marker Report: POPA3_1225

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Locus	POPA3_1225
Type	SNP
Synonym	Synonym 12_31225
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 93.12 Hordeum-OPA123-2008-6H 93.12 Hordeum-OPAConsensus-2011-6H 105.05 Hordeum-OWB-OPA2008-6H 115.075
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_18377
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1225 Marker name in barley OPA1 = 12_31225 Original SNP name = U35_18377_703 Most representative HarvEST:Barley Assembly #32 Unigene = 13620 Most representative HarvEST:Barley Assembly #35 Unigene = 18377 HarvEST Unigene 35 Probe Set = Contig16765_at; Contig16766_at Unigene 35 Rice Locus = Description for best rice BLAST hit to Unigene 35 member = ; E value = Marker name in barley Pilot OPA3 = 3_1225 Marker name in barley OPA2 = 12_31225 Original SNP name = SCRI_bbc00578_01_5 HarvEST Unigene 35 Probe Set = Contig16765_at, Contig16766_at
Probe for Locus	HAR35_18377
Locus	POPA3_1225
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare