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GrainGenes Marker Report: POPA3_1233

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Locus	POPA3_1233
Type	SNP
Synonym	Other name 12_31233 BOPA2_12_31233 Synonym 12_31233
Chromosome	6H
Chromosome Arm	6HS
Map	Barley, 2012 9KSNP 6H 3.8 Hordeum-OPA-2009-6H 3.11 Hordeum-OPA123-2008-6H 3.11 Hordeum-OPAConsensus-2011-6H 3.46
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_18515 i_12_31233
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1233 Marker name in barley OPA1 = 12_31233 Original SNP name = U35_18515_421 Most representative HarvEST:Barley Assembly #32 Unigene = 8380 Most representative HarvEST:Barley Assembly #35 Unigene = 18515 HarvEST Unigene 35 Probe Set = Contig11190_at Unigene 35 Rice Locus = LOC_Os03g16369 Description for best rice BLAST hit to Unigene 35 member = serine/arginine repetitive matrix protein 1, putative, expressed; E value = 0.00007 Marker name in barley Pilot OPA3 = 3_1233 Marker name in barley OPA2 = 12_31233 Description for best rice BLAST hit to Unigene 35 member = protein serine/arginine repetitive matrix protein 1, putative, expressed; E value = 0.00007 BLAST hit in the rice genome = serine/arginine repetitive matrix protein 1, putative, expressed
Probe for Locus	HAR35_18515
Locus	POPA3_1233
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare