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GrainGenes Marker Report: POPA3_1234

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Locus	POPA3_1234
Type	SNP
Synonym	Other name 12_31234 BOPA2_12_31234 Synonym 12_31234
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 146 Hordeum-OPA123-2008-5H 146 Hordeum-OPAConsensus-2011-5H 141.88 Hordeum-OWB-OPA2008-5H 178.303
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_18533 i_12_31234
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1234 Marker name in barley OPA1 = 12_31234 Original SNP name = U35_18533_855 Most representative HarvEST:Barley Assembly #32 Unigene = 9395 Most representative HarvEST:Barley Assembly #35 Unigene = 18533 HarvEST Unigene 35 Probe Set = Contig12421_at Unigene 35 Rice Locus = LOC_Os03g56930 Description for best rice BLAST hit to Unigene 35 member = protein app1, putative, expressed; E value = 7E-52 Marker name in barley Pilot OPA3 = 3_1234 Marker name in barley OPA2 = 12_31234 Description for best rice BLAST hit to Unigene 35 member = protein protein app1, putative, expressed; E value = 7E-52 BLAST hit in the rice genome = protein app1, putative, expressed
Probe for Locus	HAR35_18533
Locus	POPA3_1234
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare