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GrainGenes Marker Report: POPA3_1236

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Locus	POPA3_1236
Type	SNP
Synonym	Synonym 12_31236
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 110.26 Hordeum-OPA123-2008-5H 110.26 Hordeum-OPAConsensus-2011-5H 103.01 Hordeum-OWB-OPA2008-5H 129.292
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_18576
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1236 Marker name in barley OPA1 = 12_31236 Original SNP name = U35_18576_91 Most representative HarvEST:Barley Assembly #32 Unigene = 10975 Most representative HarvEST:Barley Assembly #35 Unigene = 18576 HarvEST Unigene 35 Probe Set = HV_CEa0014A18r2_at Unigene 35 Rice Locus = LOC_Os09g35790 Description for best rice BLAST hit to Unigene 35 member = heat shock factor protein 7, putative, expressed; E value = 1E-145 Marker name in barley Pilot OPA3 = 3_1236 Marker name in barley OPA2 = 12_31236 Description for best rice BLAST hit to Unigene 35 member = protein heat shock factor protein 7, putative, expressed; E value = 1E-145 BLAST hit in the rice genome = heat shock factor protein 7, putative, expressed
Probe for Locus	HAR35_18576
Locus	POPA3_1236
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare