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GrainGenes Marker Report: POPA3_1239

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Locus	POPA3_1239
Type	SNP
Synonym	Other name 12_31239 BOPA2_12_31239 Synonym 12_31239
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_18742 i_12_31239
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_1239 Marker name in barley OPA1 = 12_31239 Original SNP name = U35_18742_1218 Most representative HarvEST:Barley Assembly #32 Unigene = 9245 Most representative HarvEST:Barley Assembly #35 Unigene = 18742 HarvEST Unigene 35 Probe Set = Contig11908_s_at Unigene 35 Rice Locus = LOC_Os05g11770 Description for best rice BLAST hit to Unigene 35 member = cysteine-type peptidase, putative, expressed; E value = 3E-19 BLAST hit in the rice genome = cysteine-type peptidase, putative, expressed
Probe for Locus	HAR35_18742
Locus	POPA3_1239