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GrainGenes Marker Report: POPA3_1244

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Locus	POPA3_1244
Type	SNP
Chromosome	5H
Chromosome Arm	5HS
Map	Barley-Core-2014_5H 42.87 Hordeum-OPA-2009-5H 48.83 Hordeum-OPA123-2008-5H 48.83 Hordeum-OPAConsensus-2011-5H 40.14
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_18842
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_1244 Most representative HarvEST:Barley Assembly #32 Unigene = 7726 Most representative HarvEST:Barley Assembly #35 Unigene = 18842 HarvEST Unigene 35 Probe Set = Contig10052_at Unigene 35 Rice Locus = LOC_Os02g21920 Description for best rice BLAST hit to Unigene 35 member = senescence-associated protein, putative, expressed; E value = 7E-47 Marker name in barley Pilot OPA3 = 3_1244 Description for best rice BLAST hit to Unigene 35 member = protein senescence-associated protein, putative, expressed; E value = 7E-47 BLAST hit in the rice genome = senescence-associated protein, putative, expressed
Probe for Locus	HAR35_18842
Locus	POPA3_1244
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare