Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_1253

[Submit comment/correction]

Locus	POPA3_1253
Type	SNP
Synonym	Other name 12_31253 BOPA2_12_31253 Synonym 12_31253
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 77.89 Hordeum-OPA123-2008-6H 77.89 Hordeum-OPAConsensus-2011-6H 88.88 Hordeum-OWB-OPA2008-6H 99.66
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_19046 i_12_31253
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1253 Marker name in barley OPA1 = 12_31253 Original SNP name = U35_19046_990 Most representative HarvEST:Barley Assembly #32 Unigene = 10069 Most representative HarvEST:Barley Assembly #35 Unigene = 19046 HarvEST Unigene 35 Probe Set = Contig12824_at Unigene 35 Rice Locus = LOC_Os02g50860 Description for best rice BLAST hit to Unigene 35 member = rac-like GTP-binding protein 3, putative, expressed; E value = 1E-115 Marker name in barley Pilot OPA3 = 3_1253 Marker name in barley OPA2 = 12_31253 Description for best rice BLAST hit to Unigene 35 member = protein rac-like GTP-binding protein 3, putative, expressed; E value = 1E-115 BLAST hit in the rice genome = rac-like GTP-binding protein 3, putative, expressed
Probe for Locus	HAR35_19046
Locus	POPA3_1253
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare