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GrainGenes Marker Report: POPA3_1270

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Locus
POPA3_1270
Type
SNP
Synonym
Other name12_31270
BOPA2_12_31270
Synonym12_31270
Map Data
Barley, OPA 2009, Consensus
Species
Hordeum vulgare
Probe
HAR35_19553
i_12_31270
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
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Marker name in barley Pilot OPA1 = 3_1270
Marker name in barley OPA1 = 12_31270
Original SNP name = U35_19553_1161
Most representative HarvEST:Barley Assembly #32 Unigene = 9976
Most representative HarvEST:Barley Assembly #35 Unigene = 19553
HarvEST Unigene 35 Probe Set = Contig12692_at; Contig12692_s_at
Unigene 35 Rice Locus = LOC_Os04g51520
Description for best rice BLAST hit to Unigene 35 member = xyloglucan endotransglycosylase/hydrolase protein 8 precursor, putative, expressed; E value = 1E-102
BLAST hit in the rice genome = xyloglucan endotransglycosylase/hydrolase protein 8 precursor, putative, expressed



Probe for Locus
HAR35_19553
Locus
POPA3_1270