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GrainGenes Marker Report: POPA3_1271

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Locus	POPA3_1271
Type	SNP
Synonym	Other name 12_31271 BOPA2_12_31271 Synonym 12_31271
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 80.5 Hordeum-OPA-2009-5H 99.56 Hordeum-OPA123-2008-5H 99.56 Hordeum-OPAConsensus-2011-5H 86.08
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_19573 i_12_31271
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1271 Marker name in barley OPA1 = 12_31271 Original SNP name = U35_19573_1049 Most representative HarvEST:Barley Assembly #32 Unigene = 10541 Most representative HarvEST:Barley Assembly #35 Unigene = 19573 HarvEST Unigene 35 Probe Set = Contig13898_at Unigene 35 Rice Locus = LOC_Os09g32040 Description for best rice BLAST hit to Unigene 35 member = no apical meristem protein, expressed; E value = 1E-115 Marker name in barley Pilot OPA3 = 3_1271 Marker name in barley OPA2 = 12_31271 Description for best rice BLAST hit to Unigene 35 member = protein no apical meristem protein, expressed; E value = 1E-115 BLAST hit in the rice genome = no apical meristem protein, expressed
Probe for Locus	HAR35_19573
Locus	POPA3_1271
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare